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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010682.1_543_649_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
543 - 649
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCTG
5'SS Class:
weak_major
3'SS Sequence:
CCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CCTCATTTGATT
Flanking Amino Acid:
AQMKRFCKAQAIQRRLEEIE
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
54.5
49.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.8
0.56
0.7
68.5
25
Minor 5ss
45.6
-0.5
3.2
64.4
47
Minor BPS
50.4
0.09
1.5
64.71
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025813
Chromosome:
PEDO01010682.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021654
10 - 937
928