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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010682.1_722_847_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
722 - 847
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CGGGGACCTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
AGTGCCCGATCC
Flanking Amino Acid:
GLDLGTIGESYATCKRTLPR
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
48.4
-0
1.1
42.1
37.9
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
43.4
-0.5
2
55.53
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025813
Chromosome:
PEDO01010682.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021654
10 - 937
928