Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010705.1_595_1208_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

595 - 1208

Intron Length:

614

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

GTCCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

CTCCCTGTGATA

Flanking Amino Acid:

RREIEIQAHLRHPNVLRLYN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

55.1

43.9

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

0.41

0.8

58.1

33.2

Minor 5ss

23.7

-3

3.3

29.1

43.5

Minor BPS

45.6

-0.3

54.57

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027841

Chromosome:

PEDO01010705.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018905

21 - 2049

2029