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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010711.1_549_1598_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
549 - 1598
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTGTCCTAAATC
Flanking Amino Acid:
VNWIPCTDPTRFFISSLVRN
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
73.3
37.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
65.6
0.35
1
64.4
40.5
Minor 5ss
31.5
-2.1
2.9
42.7
44
Minor BPS
63.7
0.41
1.7
69.56
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027089
Chromosome:
PEDO01010711.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026964
485 - 2013
1529