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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010737.1_2508_2627_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2508 - 2627
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTCCTCTGAACA
Flanking Amino Acid:
SSFLPFTIPHRTTKATALNG
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
82.2
0.72
0.9
73.7
41.5
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
65.4
0.48
1.4
73.43
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010941
Chromosome:
PEDO01010737.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011431
1475 - 4344
2870