Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010737.1_2928_3131_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2928 - 3131

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCCATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

CTTTCGGTAGCT

Flanking Amino Acid:

IAIVNDLFGAGFDTVTTALS

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

72.4

0.5

63.1

43.3

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

45.9

-0.2

2.7

75.34

47.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010941

Chromosome:

PEDO01010737.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011431

1475 - 4344

2870