About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010746.1_13202_16835_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
13202 - 16835

Intron Length:
3634

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACCGTGG

5'SS Class:
major

3'SS Sequence:
CTCTCCGTTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CATTCAC

U12 Branch Point Sequence:
AGAGCATTCACG

Flanking Amino Acid:
EAEDAQTDITGADTMSEAST

Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
64.5
0.34
1.3
52.4
46.9

Major BPS
69.9
0.5
1
73
31.5

Major PPT
77.6
0.62
0.9
68.5
37.3

Minor 5ss
40.6
-1
3.4
56
48.2

Minor BPS
44.3
-0.5
2.1
48.74
44.2

Associated Gene:

Gene:
TEX264

Ensembl Gene ID:

Chromosome:
PEDO01010746.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

12888 - 35526
22639