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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010752.1_525_759_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
525 - 759
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCTGGGTCA
5'SS Class:
major
3'SS Sequence:
CACCTTCCCCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
CTCCCCATCACC
Flanking Amino Acid:
MDLHCAKVTIV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.26
1.3
51.1
39.8
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
49.3
-0
1.6
53.7
36.3
Minor 5ss
21.8
-3.2
3.9
27.5
37.7
Minor BPS
47.9
-0.1
2.1
60.7
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002319
Chromosome:
PEDO01010752.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037387
522 - 1334
813