Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010791.1_1036_1867_R

Intron Information:

Intron Rank:

130339

Intron Class:

major

Intron Phase:

Intron Coordinates:

1036 - 1867

Intron Length:

832

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACCGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

CCCCCCCTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.2

45.2

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

66.9

0.38

0.9

60.9

27.7

Minor 5ss

35.8

-1.6

3.3

46.8

48.5

Minor BPS

54.1

0.12

1.8

61.14

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017357

Chromosome:

PEDO01010791.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046957

21 - 2399

2379