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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010796.1_1039_1161_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1039 - 1161
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTGG
5'SS Class:
major
3'SS Sequence:
CTTCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCCTTCCATC
Flanking Amino Acid:
FFILRRKPVEGYDISFLITN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
59.3
42
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
74.6
0.55
0.8
65.9
34.8
Minor 5ss
30.8
-2.2
3.2
38.3
46.7
Minor BPS
44.7
-0.4
1.9
52.32
39.5

Associated Gene:

Gene:
ARPC4
Ensembl Gene ID:
ENSAPLG00000022762
Chromosome:
PEDO01010796.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041937
822 - 1746
925
ENSAPLT00000001291
822 - 1746
925