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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010809.1_1306_2153_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1306 - 2153
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTATTCATCT
Flanking Amino Acid:
LTPQAVKIRADIEVACYGYE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
70.6
0.46
0.9
69.2
36.7
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
49.2
0.02
2
73.02
43.9

Associated Gene:

Gene:
EIF2S1
Ensembl Gene ID:
ENSAPLG00000025236
Chromosome:
PEDO01010809.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028072
21 - 3530
3510