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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010809.1_354_1207_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
354 - 1207
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCAATGTGATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CCGCCCTGCAAT
Flanking Amino Acid:
NCSTETMPIKINLIAPPRYV
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
54.8
0.11
1.1
49.4
43.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
43.4
-0.4
2
55.26
46.2

Associated Gene:

Gene:
EIF2S1
Ensembl Gene ID:
ENSAPLG00000025236
Chromosome:
PEDO01010809.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028072
21 - 3530
3510