Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_13173_13459_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13173 - 13459

Intron Length:

287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTCCC

5'SS Class:

major

3'SS Sequence:

TGTCCCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGGCAG

U12 Branch Point Sequence:

TGTCCCTTCACA

Flanking Amino Acid:

LKVDVEDVKMGKEPEGIIRS

Intron Amino Acid Position:

1393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

65.8

40.2

Major BPS

37.4

-0.7

1.7

42.8

49.4

Major PPT

78.3

0.64

0.8

72.1

32.6

Minor 5ss

29.6

-2.3

2.7

28.8

35.5

Minor BPS

68.2

0.57

1.8

77.93

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015159

Chromosome:

PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044911

779 - 17644

16866

ENSAPLT00000015959

2099 - 17644

15546