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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_26820_27061_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26820 - 27061
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCCGCT
5'SS Class:
weak_major
3'SS Sequence:
CCCTCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCCTCCCCAACA
Flanking Amino Acid:
FAADAVSRLSGRIGVAAVTA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.3
51.7
45.5
Major BPS
50
0
1.2
61.8
35.9
Major PPT
67.5
0.39
0.8
61.7
27.4
Minor 5ss
43
-0.8
3.5
56.7
47.5
Minor BPS
49.2
-0
2
59.96
45.8

Associated Gene:

Gene:
ILVBL
Ensembl Gene ID:
ENSAPLG00000026632
Chromosome:
PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025242
25412 - 30963
5552