About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_28110_28541_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
28110 - 28541

Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCG|GTGAGCGGG

5'SS Class:
major

3'SS Sequence:
TTGGGGCATGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGCTGAC

U12 Branch Point Sequence:
TGGGGCTGACCG

Flanking Amino Acid:
LLPPTPAEELREALEALGIP

Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.9
0.54
1.1
54.4
44.7

Major BPS
49.4
-0
1.3
42.8
41.8

Major PPT
62.9
0.29
1.1
55
44.9

Minor 5ss
30.8
-2.2
3.3
38.2
46.7

Minor BPS
40.7
-0.8
2.1
44.43
47.2

Associated Gene:

Gene:
ILVBL

Ensembl Gene ID:

Chromosome:
PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

25412 - 30963
5552