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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_29360_29603_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29360 - 29603
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TCCTCTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TCCTCTCTAACA
Flanking Amino Acid:
GRAAQGEGEPGEGSDPHPAA
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
77
0.61
0.8
72.8
30.6
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
63.3
0.41
1.7
71.45
41.1

Associated Gene:

Gene:
ILVBL
Ensembl Gene ID:
ENSAPLG00000026632
Chromosome:
PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025242
25412 - 30963
5552