Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_3285_3555_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3285 - 3555

Intron Length:

271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGCCAC

5'SS Class:

major

3'SS Sequence:

CCCTGTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCCAC

U12 Branch Point Sequence:

TGGGTGCCACCC

Flanking Amino Acid:

HGMMTTATIKVPAKLLPSVV

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.3

55.9

43.4

Major BPS

43.9

-0.3

1.4

49.9

45.3

Major PPT

70.1

0.45

0.8

60.9

35.2

Minor 5ss

39.7

-1.2

2.9

50.5

46.1

Minor BPS

31.3

-1.4

2.2

38.97

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015159

Chromosome:

PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044911

779 - 17644

16866

ENSAPLT00000015959

2099 - 17644

15546