About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_34671_35140_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34671 - 35140
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
ACCCGCTCACCC
Flanking Amino Acid:
GAGGWQDAGLCKDAHPLREP
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
40.7
-0.7
2.1
45.94
42.9

Associated Gene:

Gene:
SYDE1
Ensembl Gene ID:
ENSAPLG00000030638
Chromosome:
PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041217
31045 - 35920
4876