Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010810.1_8145_8262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8145 - 8262

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

TGGGTGCTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

GGGTCCTGAGGG

Flanking Amino Acid:

LQLIEYKGQKAAEYTDKNLR

Intron Amino Acid Position:

720

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

64.7

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

0.23

1.1

54.2

45.8

Minor 5ss

31.2

-2.1

3.4

34.3

Minor BPS

-0.5

46.01

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015159

Chromosome:

PEDO01010810.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044911

779 - 17644

16866

ENSAPLT00000015959

2099 - 17644

15546