About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010825.1_1416_4134_R

Intron Information:

Intron Rank:
133303
Intron Class:
major
Intron Phase:
Intron Coordinates:
1416 - 4134
Intron Length:
2719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGCG
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CCCCACTGAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.4
62.9
40.4
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
72
0.49
0.8
65.4
30.5
Minor 5ss
27
-2.6
3.1
32.7
42.2
Minor BPS
42.3
-0.6
1.8
45.54
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018966
Chromosome:
PEDO01010825.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045888
21 - 5197
5177
ENSAPLT00000042040
202 - 5197
4996
ENSAPLT00000035496
21 - 5197
5177