Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010826.1_6555_7537_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6555 - 7537

Intron Length:

983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGGGTGCC

5'SS Class:

major

3'SS Sequence:

CTCCTTGATTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

GTCTCCTTGATT

Flanking Amino Acid:

LTYVSSSENYAIHENAFIVF

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

62.1

38.4

Major BPS

71.5

0.53

1.1

43.2

Major PPT

74.6

0.55

0.9

72.6

36.7

Minor 5ss

27.6

-2.6

3.3

35.7

41.2

Minor BPS

76.8

0.93

1.1

83.77

37.5

Associated Gene:

Gene:

PGAP2

Ensembl Gene ID:

ENSAPLG00000019747

Chromosome:

PEDO01010826.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045728

33 - 9671

9639