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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010826.1_756_876_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
756 - 876
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
GGCTGTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGGTAG
U12 Branch Point Sequence:
CTGCCGGTAGCC
Flanking Amino Acid:
FWDFSNKELVRRWPRGRDMK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.6
36.2
Major BPS
33.3
-1
1.5
20.4
33.7
Major PPT
69.9
0.45
1
61.9
40
Minor 5ss
39.8
-1.1
2.9
48.2
42.1
Minor BPS
38.6
-0.8
2.6
51.14
45.9

Associated Gene:

Gene:
PGAP2
Ensembl Gene ID:
ENSAPLG00000019747
Chromosome:
PEDO01010826.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045728
33 - 9671
9639