Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010846.1_2206_2381_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2206 - 2381

Intron Length:

176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

TGTTCCCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

TGGCCAGGGACT

Flanking Amino Acid:

IVIKDDVASEVYRAVASVQD

Intron Amino Acid Position:

355

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

72.1

0.5

0.9

66.6

34.5

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

40.6

-0.6

2.3

59.61

43.3

Associated Gene:

Gene:

PIGS

Ensembl Gene ID:

ENSAPLG00000004653

Chromosome:

PEDO01010846.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021723

1930 - 5143

3214

ENSAPLT00000004800

1930 - 4653

2724