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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010870.1_1358_1641_R

Intron Information:

Intron Rank:
149062
Intron Class:
major
Intron Phase:
Intron Coordinates:
1358 - 1641
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCCG
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TTGTCAGTACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
59.3
45.2
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
41.1
-1
2.7
51.7
44.7
Minor BPS
41.5
-0.6
2.5
59.8
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027686
Chromosome:
PEDO01010870.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042631
821 - 1891
1071