Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010897.1_927_1010_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

927 - 1010

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCGG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

GCCCCCCCATTT

Flanking Amino Acid:

RYVFPEQPCQEERFSLEDPE

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

59.7

46.7

Major BPS

48.9

-0

1.3

39.1

Major PPT

79.2

0.66

0.8

70.9

35.4

Minor 5ss

31.8

-2.1

38.6

46.5

Minor BPS

-0.6

1.9

51.07

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022699

Chromosome:

PEDO01010897.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031458

331 - 2768

2438

ENSAPLT00000030451

21 - 2768

2748