Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010925.1_852_1188_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

852 - 1188

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCATCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CCGCCCTGACCC

Flanking Amino Acid:

GDVAALQRVVCDTFQLCKEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

35.7

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

67.6

0.4

0.8

60.9

27.9

Minor 5ss

35.2

-1.7

2.8

40.6

40.8

Minor BPS

-0.2

1.8

52.22

Associated Gene:

Gene:

CSF3

Ensembl Gene ID:

ENSAPLG00000018208

Chromosome:

PEDO01010925.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032338

21 - 1697

1677