Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010938.1_1621_4505_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1621 - 4505

Intron Length:

2885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

AGGTGCTAACCA

Flanking Amino Acid:

GYPIKAPKLPGGYGLPYSTG

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

70.6

41.4

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

81.4

0.71

0.7

72.9

31.9

Minor 5ss

36.7

-1.5

3.3

50.2

46.4

Minor BPS

43.5

-0.4

2.2

53.88

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027386

Chromosome:

PEDO01010938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032289

21 - 9068

9048