Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010938.1_5336_5485_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5336 - 5485

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

CCACGCTGACAT

Flanking Amino Acid:

AAAAKAAAKYGAGVLPGAGG

Intron Amino Acid Position:

233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.3

34.6

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

78.5

0.64

0.7

70.1

30.8

Minor 5ss

-2.1

2.6

39.1

38.9

Minor BPS

38.2

-0.8

48.15

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027386

Chromosome:

PEDO01010938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044395

923 - 9068

8146

ENSAPLT00000032289

21 - 9068

9048