Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010938.1_6771_6852_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6771 - 6852

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTGTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAG

U12 Branch Point Sequence:

CTCTCCTGTCCT

Flanking Amino Acid:

PGVGGIPGVAGAGTPAAAAA

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.1

81.3

32.8

Major BPS

45.3

-0.3

1.7

51.1

46.3

Major PPT

74.8

0.56

0.8

72.1

32.5

Minor 5ss

38.7

-1.3

3.4

57.8

46.8

Minor BPS

39.8

-0.7

3.6

68.51

47.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027386

Chromosome:

PEDO01010938.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044395

923 - 9068

8146

ENSAPLT00000032289

21 - 9068

9048