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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010952.1_5678_5797_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5678 - 5797
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTCCG
5'SS Class:
major
3'SS Sequence:
CCTCTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
CTGCAGGTGATG
Flanking Amino Acid:
QLTLEPVLGEDEKLCGRPHL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.5
43.7
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
72.7
0.51
0.9
68.7
31.7
Minor 5ss
28
-2.5
2.9
33.1
41.9
Minor BPS
33.3
-1.4
2.4
35.94
40.2

Associated Gene:

Gene:
CDT1
Ensembl Gene ID:
ENSAPLG00000006936
Chromosome:
PEDO01010952.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007199
2337 - 6358
4022