Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010969.1_10162_10476_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10162 - 10476

Intron Length:

315

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCAGGTATG

5'SS Class:

major

3'SS Sequence:

TGCAGCATCAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TCTCCCTGCATT

Flanking Amino Acid:

RDQRPERHQSNRAKATVAPL

Intron Amino Acid Position:

478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

78.3

36.1

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

46.2

-0.2

1.7

46.1

40.2

Minor 5ss

29.3

-2.4

41.6

39.3

Minor BPS

0.17

1.9

74.16

42.9

Associated Gene:

Gene:

M1AP

Ensembl Gene ID:

ENSAPLG00000003560

Chromosome:

PEDO01010969.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017844

9849 - 30121

20273