About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010969.1_13837_15424_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
13837 - 15424

Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAA|GTATTTAAT

5'SS Class:
major

3'SS Sequence:
TTCCTTCTCCTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTCTAAA

U12 Branch Point Sequence:
GCAGTCTAAACC

Flanking Amino Acid:
SYATAPKTTLICLKCDLQER

Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.2
0.48
1
75.3
33.9

Major BPS
67.6
0.44
1.2
69.9
35.3

Major PPT
79.3
0.66
0.7
73
31.9

Minor 5ss
45.3
-0.5
2.6
59.8
39

Minor BPS
48.8
-0.1
1.8
54.93
43.4

Associated Gene:

Gene:
M1AP

Ensembl Gene ID:

Chromosome:
PEDO01010969.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9849 - 30121
20273

10029 - 31529
21501