Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010969.1_24996_29866_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

24996 - 29866

Intron Length:

4871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTGAAATTA

5'SS Class:

weak_major

3'SS Sequence:

TCAGCAACTGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TTTTCAGCAACT

Flanking Amino Acid:

QECLLPFVVGESFARVQACI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.19

1.1

60.1

34.9

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

52.8

0.06

1.1

50.6

37.1

Minor 5ss

37.4

-1.4

3.3

47.5

Minor BPS

53.4

0.19

2.4

85.74

40.2

Associated Gene:

Gene:

M1AP

Ensembl Gene ID:

ENSAPLG00000003560

Chromosome:

PEDO01010969.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017844

9849 - 30121

20273