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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010969.1_25005_29872_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25005 - 29872
Intron Length:
4868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TATTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTGAAT
Flanking Amino Acid:
NQQECLLPFVQLKESFARVQ
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
65.2
0.56
1.7
84.29
35.5

Associated Gene:

Gene:
M1AP
Ensembl Gene ID:
ENSAPLG00000003560
Chromosome:
PEDO01010969.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003624
10029 - 31529
21501