Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010980.1_4181_4286_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4181 - 4286

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

GTTTTCTCAGCC

Flanking Amino Acid:

QEREQEKLQLTAQLQLARQR

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

67.6

37.6

Major BPS

0.52

1.5

79.6

35.6

Major PPT

68.8

0.42

0.8

61.8

28.9

Minor 5ss

27.7

-2.6

29.4

36.9

Minor BPS

57.8

0.22

1.8

71.34

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017460

Chromosome:

PEDO01010980.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043604

3677 - 5869

2193