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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010980.1_4492_5687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4492 - 5687
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTATTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
ERVEAYRLLEEGHRAYLSSA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.8
74
36.6
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017460
Chromosome:
PEDO01010980.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043604
3677 - 5869
2193