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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011014.1_16673_16823_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16673 - 16823
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCTTGTAACT
Flanking Amino Acid:
QNTFVTLGAIGEGFHNYHHT
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.6
0.67
0.8
71.8
38.1
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
57.1
0.3
2
79.06
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010786
Chromosome:
PEDO01011014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011232
16482 - 21129
4648