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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011014.1_4913_5535_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4913 - 5535
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
CACATCTCCACG
Flanking Amino Acid:
NILFLTDVPREANAAEEADT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
82.1
0.72
0.8
79.8
32.2
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
41.5
-0.8
2
40.66
43.5

Associated Gene:

Gene:
ENOPH1
Ensembl Gene ID:
ENSAPLG00000011747
Chromosome:
PEDO01011014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012242
4070 - 7473
3404