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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011014.1_5660_5976_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5660 - 5976
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATAAC
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAA
U12 Branch Point Sequence:
CGTCCAGCAACT
Flanking Amino Acid:
GYSTEGDILELFDGHFDTKI
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.7
35.6
Major BPS
41.8
-0.5
1.3
43.3
37.8
Major PPT
85.3
0.8
0.8
76.9
37.3
Minor 5ss
34
-1.8
3.1
44.4
43.7
Minor BPS
43
-0.4
2.3
63.97
45.6

Associated Gene:

Gene:
ENOPH1
Ensembl Gene ID:
ENSAPLG00000011747
Chromosome:
PEDO01011014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012242
4070 - 7473
3404