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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011014.1_6110_7050_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6110 - 7050
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CGTTCTGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTGTCCTCACCT
Flanking Amino Acid:
AAYTTGQVKGEVFEDVVPAI
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
66
40.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
76.6
0.6
0.9
73.2
37.3
Minor 5ss
31.9
-2.1
2.7
33.3
35.4
Minor BPS
65
0.55
1.9
84.2
42.6

Associated Gene:

Gene:
ENOPH1
Ensembl Gene ID:
ENSAPLG00000011747
Chromosome:
PEDO01011014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012242
4070 - 7473
3404