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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011014.1_7254_7367_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7254 - 7367
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CGCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCCAC
U12 Branch Point Sequence:
CACCCCCCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
46
-0.2
1.3
53.5
42
Major PPT
68.2
0.41
0.8
61.3
29.1
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
40.3
-0.7
2
45.99
42.3

Associated Gene:

Gene:
ENOPH1
Ensembl Gene ID:
ENSAPLG00000011747
Chromosome:
PEDO01011014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012242
4070 - 7473
3404