Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011015.1_2268_2537_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2268 - 2537

Intron Length:

270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTTTT

5'SS Class:

major

3'SS Sequence:

TCTTTGCTCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

GGTGTAGTAACT

Flanking Amino Acid:

YSKDTCLNIQTISELTVEFE

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

81.6

33.2

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

82.7

0.73

0.8

80.5

31.5

Minor 5ss

47.4

-0.3

2.8

63.8

41.6

Minor BPS

45.3

-0.2

2.3

66.12

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011848

Chromosome:

PEDO01011015.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012322

558 - 2992

2435

ENSAPLT00000042561

145 - 2992

2848