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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011015.1_933_1148_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
933 - 1148
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
IIRLIYRKRKNLKRPRAPST
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
37.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
35.8
-1.6
3.5
47.7
42.3
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011848
Chromosome:
PEDO01011015.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012322
558 - 2992
2435