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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011027.1_1163_1275_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1163 - 1275
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
CCTCGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CAGCCCCCACCT
Flanking Amino Acid:
PRLQHVIQEEGVDVSEDGMK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
76.1
0.59
0.8
68.7
31.7
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
41.6
-0.5
2
55.74
45.7

Associated Gene:

Gene:
RFC5
Ensembl Gene ID:
ENSAPLG00000003227
Chromosome:
PEDO01011027.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003303
21 - 1662
1642