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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011027.1_1436_1532_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1436 - 1532
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
GCTCCATCCAGC
Flanking Amino Acid:
TQDAQNALRRVIEKFTENTR
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
85.1
0.79
0.7
79.9
25.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
37.8
-0.9
2.2
46
42.3

Associated Gene:

Gene:
RFC5
Ensembl Gene ID:
ENSAPLG00000003227
Chromosome:
PEDO01011027.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003303
21 - 1662
1642