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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011027.1_364_446_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
364 - 446
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CCTCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAGCATTTAATC
Flanking Amino Acid:
IQLLIKMADIEYRLAAGTSE
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
62.5
43.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.9
0.56
0.9
68.5
31.8
Minor 5ss
33.7
-1.9
3
37.8
40.8
Minor BPS
51.7
0.03
1.4
56.42
35.7

Associated Gene:

Gene:
RFC5
Ensembl Gene ID:
ENSAPLG00000003227
Chromosome:
PEDO01011027.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003303
21 - 1662
1642