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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011027.1_502_580_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
502 - 580
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGGTC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
AACACCCGAACT
Flanking Amino Acid:
LTEIHLFVHRVDFPPSVRIQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
67.8
37.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.6
0.71
0.7
76.9
25.1
Minor 5ss
31.7
-2.1
4
48.7
47.8
Minor BPS
48.9
-0
1.8
66.7
43

Associated Gene:

Gene:
RFC5
Ensembl Gene ID:
ENSAPLG00000003227
Chromosome:
PEDO01011027.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003303
21 - 1662
1642