Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011030.1_4633_5209_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4633 - 5209

Intron Length:

577

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTACGTCCC

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GTGTTTTTGATG

Flanking Amino Acid:

YSSSYGQTQSSYSTQSTPQA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.1

54.9

42.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

89.2

0.88

0.7

81.3

30.7

Minor 5ss

36.6

-1.5

3.1

39.3

Minor BPS

57.3

0.08

1.3

57.67

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027138

Chromosome:

PEDO01011030.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026922

2638 - 5688

3051