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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011030.1_5352_5423_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5352 - 5423
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GGGTCCGAAAGT
Flanking Amino Acid:
QPPAASSSTGSYGSSSQSSS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
82.8
0.74
0.9
80.6
31.4
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
42.9
-0.4
2.5
60.92
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027138
Chromosome:
PEDO01011030.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026922
2638 - 5688
3051