Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011079.1_647_885_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

647 - 885

Intron Length:

239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTGTGCTGG

5'SS Class:

weak_major

3'SS Sequence:

TGGCTCTGCTGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

TGGCTCGGAGCC

Flanking Amino Acid:

LVFAWCAHSCVALALCRCLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.3

0.08

1.1

42.3

41.4

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

48.1

-0.1

1.7

57.5

43.2

Minor 5ss

45.9

-0.4

2.8

55.3

48.9

Minor BPS

39.8

-0.8

2.1

49.12

40.8

Associated Gene:

Gene:

IL17C

Ensembl Gene ID:

ENSAPLG00000007297

Chromosome:

PEDO01011079.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007567

3 - 962

960